Familiar tools, natively in R | Input data | bigWig and bigBed files | Interval coordinates | Remote databases | Visual documentation | Grouping data | Column specification | Getting started | Meta-analysis | Related work

Introduction | Installation | Characterizing RNA editing sites in scRNA-seq data | Specifying sites to quantify | Quantifying sites in single cells using pileup_cells | Quantifying sites in Smart-seq2 libaries | Quantifying RNA editing sites in bulk RNA-Seq | Generate editing site read counts using pileup_sites | Prepare for differential editing | Run differential editing | Examine overall editing activites using the Alu Editing Index | Novel RNA editing site detection | R session information

Code and full report | The problem | Our proposal | Session info

Introduction: Why use clustifyr? | Installation | A simple example: 10x Genomics PBMCs | Calculate correlation coefficients | Plot cluster identities and correlation coefficients | Classify cells using known marker genes | Direct handling of SingleCellExperiment objects | Direct handling of Seurat objects | Building reference matrix from single cell expression matrix | Session info

Basic Usage | Aesthetics | Position

Basic Usage | Aesthetics | Position